FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12728600
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTGA1253339298.46638279150889No Hit
ACTTGC422400.33185110695598885No Hit
ACCTGA183590.14423424414311078No Hit
ATTTGA160080.12576402746570717No Hit
ACTTCA140640.11049133447511902No Hit
CCTTGA137460.10799302358468332No Hit
ACTTTA128240.10074949326713072No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)