FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12770289
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTGA1256743998.4115473032756No Hit
ACTTGC434100.33992966016665715No Hit
ACCTGA186430.14598729911280786No Hit
ATTTGA163990.12841526139306636No Hit
CCTTGA145020.1135604683652813No Hit
ACTTCA141880.11110163599273282No Hit
ACTTTA134260.10513466061731257No Hit
ACTTAA127960.10020133451952419No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)