FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13546967
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1330039298.17985088470357No Hit
TAGCTC325370.24017922240454265No Hit
TAGCTA289250.21351642769927764No Hit
TAGTTT271730.2005836435565245No Hit
TAGCCT241790.1784827555865457No Hit
TAACTT178740.13194097247007391No Hit
TATCTT176690.13042771861775407No Hit
TAGCAT146030.1077953463679361No Hit
TAGATT144370.10656997983386245No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)