FastQCFastQC Report
Fri 10 May 2024
EGAF00004827758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13546967
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT236550.17461473110549394No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT213360.15749650825900735No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT179470.132479838476022No Hit
CACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTT140500.1037132518297269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)