FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004827759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13546420
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1329514598.14508187403018No Hit
TAGCTC322050.23773808873488347No Hit
TAGCTA291930.21550343190304155No Hit
TAGTTT271630.200517922816508No Hit
TAGCCT243220.17954559211954155No Hit
TATCTT182730.13489172785134373No Hit
TAACTT182700.13486958177880207No Hit
TAGCAT152540.11260539685023793No Hit
TAGATT150830.11134307071536244No Hit
TCGCTT137470.10148068641013641No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)