FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004827762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13577675
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1332302498.12448743985992No Hit
TAGCTC327590.24127105708451557No Hit
TAGCTA297280.2189476475169718No Hit
TAGTTT272220.20049087932948756No Hit
TAGCCT240920.17743833167313255No Hit
TATCTT187250.13791020922212383No Hit
TAACTT184730.13605422135969525No Hit
TAGATT154250.11360560626174952No Hit
TAGCAT153670.11317843445214294No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)