FastQCFastQC Report
Wed 8 May 2024
EGAF00004827768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13346017
Total Bases80 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTG1316017598.607509641266No Hit
ATAGTG222190.1664841278113163No Hit
ACAGTT187430.14043890398161488No Hit
CCAGTG159910.11981851963773162No Hit
ACCGTG158310.11861966008285468No Hit
ACATTG154090.11545766800686677No Hit
ACAGCG152600.11434123004638762No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)