FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13436209
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTG1323484898.50135555348982No Hit
ATAGTG217220.16166762514634894No Hit
ACATTG209000.1555498280802271No Hit
ACAGTT175660.13073628134245308No Hit
CCAGTG164420.12237082647344948No Hit
ACAATG157240.11702705725997564No Hit
ACCGTG155940.11605952244416562No Hit
ACAGCG150140.11174282865055166No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)