FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12179609
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAT1196162498.2102463223573No Hit
GCCACT275970.2265836284235397No Hit
ACCAAT215510.1769432828262385No Hit
GCCCAT214480.1760976070742501No Hit
GCCAAA201130.1651366640751768No Hit
GCTAAT182700.15000481542551983No Hit
GTCAAT162650.13354287481642474No Hit
TCCAAT155470.12764777588508794No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)