FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004827783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12128462
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1191784598.26344840755571No Hit
CTTGTC309900.2555146728414534No Hit
CTTTTA162140.13368554067284047No Hit
ATTGTA161130.13285278875425424No Hit
CTAGTA138910.11453224654535753No Hit
CCTGTA138650.11431787476433533No Hit
CGTGTA138260.11399631709280203No Hit
CTGGTA132660.10937907873232401No Hit
CTCGTA132280.10906576612929157No Hit
TTTGTA131870.10872771832075659No Hit
CTTGAA128030.10556161201642879No Hit
CATGTA126310.10414346023428196No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)