FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004827786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12067470
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1186141998.29250870314988No Hit
CTTGTC299470.2481630366597141No Hit
CTTTTA160880.13331709132071595No Hit
ATTGTA151420.1254778342104849No Hit
CGTGTA144650.11986771046457957No Hit
CCTGTA137040.11356150046364316No Hit
CTGGTA134850.11174670415588354No Hit
CTAGTA133430.11056998691523576No Hit
CTCGTA130180.10787679604755596No Hit
TTTGTA129720.10749560595551512No Hit
CTTGAA129630.10742102528533322No Hit
CATGTA124520.10318650056722743No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)