FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12144895
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1192316098.17425346205134No Hit
CTTGTC294530.2425134181892886No Hit
CTTTTA200440.16504053760860016No Hit
CTTATA172170.1417632676116179No Hit
ATTGTA147670.12159018254171813No Hit
CGTGTA140220.11545591789801395No Hit
CCTGTA134710.11091903223535485No Hit
CTAGTA129600.10671150306363292No Hit
CTCGTA129570.10668680132681263No Hit
TTTGTA128420.10573990141536835No Hit
CTGGTA126810.10441424153934636No Hit
CTTGAA124860.10280862864602781No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)