EGAF00004827791 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004827791
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12144895
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG	34869	0.2871082870621771	No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC	23671	0.19490493742432521	No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA	15329	0.12621764123938495	No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	15252	0.12558362999433095	No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG	15251	0.12557539608205753	No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT	15068	0.12406859013602012	No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC	13996	0.11524183617890481	No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	13729	0.1130433816018994	No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC	12994	0.10699145608092947	No Hit
CGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGCTCGCAG	12891	0.10614336311676634	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACCGT	1460	45.050457	1
CATTCGG	3265	39.569702	4
GCGGGTC	9840	38.243202	2
GCATTCG	3470	37.096924	3
GCGATTT	4090	35.627403	94
CGCGGGT	10850	34.81371	1
TCACCCG	4585	34.73579	3
GACCGTT	1950	33.4886	2
ACCGTTG	1985	33.1348	3
ACCCGGC	4990	32.292885	5
CGGGTCT	11705	32.149773	3
GTCTGTC	12870	29.311962	6
TGCAACC	12470	29.251024	94
GGTCTGT	12915	29.21019	5
CCGTTGA	2325	28.289047	4
ATTCGGG	4615	27.892801	5
CGGCCCG	5915	27.401367	8
CGACCTA	1110	26.66434	4
GGGTCTG	14910	25.616875	4
TCGGGCC	5140	25.04352	7