EGAF00004827803 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004827803
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10439029
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	58420	0.5596305939949013	No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	31586	0.30257603461011556	No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC	17214	0.16490039447155477	No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC	16380	0.15691114566306885	No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA	15921	0.15251418498789493	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	15881	0.15213100758700834	No Hit
CTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAGAATTAATGTG	15439	0.14789689730721126	No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG	14977	0.14347119832697083	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCACCCG	11290	54.899597	3
ACCCGGC	11305	54.827805	5
CACCCGG	12105	51.164196	4
CGGCCCG	12915	47.66473	8
CGACCGT	1080	42.998936	1
CCAGTAG	7265	41.745342	5
CTCACCC	15450	40.362938	2
GCCAGTA	7620	39.861935	4
CCGGCCC	16250	38.6394	7
CAGTAGC	8140	37.60745	6
CCCGGCC	16855	37.196053	6
GTAGCAT	8535	35.979397	8
TAGCATA	8525	35.856724	9
CGGACAC	11550	34.39129	12-13
AGTAGCA	9060	34.154884	7
TCGTGCG	4350	33.4439	7
GTGCGTC	4330	33.382374	9
CTCGATT	11840	33.196247	48-49
GACACGG	12280	32.387318	14-15
CGTGCGT	4515	32.32774	8