FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004827853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8176066
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT313750.3837420099103897No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG148250.18132192181423193No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA144630.17689436460028576No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG142120.17382442852100266No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC134540.1645534661779883No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC116580.14258691160271947No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA91000.11130047140030426No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC90660.11088462348518224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)