FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8511096
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT327050.38426308433132467No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG152070.1786726409853678No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA150930.1773332130198038No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG149520.17567655211502725No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC143090.16812170841452148No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC122200.1435772784139669No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA94790.11137226039983569No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC92580.10877565004554055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)