FastQCFastQC Report
Wed 8 May 2024
EGAF00004827857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8494297
Total Bases857.9 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT327760.3858588886166801No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG154030.18133342876991468No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA150820.17755442269089483No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG150270.17690692943748024No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC138490.16303880120979994No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC120190.1414949347780046No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA96690.11382931395028924No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC93860.11049766684635585No Hit

[OK]Adapter Content

Adapter graph