FastQCFastQC Report
Wed 8 May 2024
EGAF00004827868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9835315
Total Bases993.3 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA421360.42841535832863514No Hit
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACG401910.40863968261311406No Hit
CTCAGGTTCTTGTTTTGCACAGCAGTCAGCCATTTCACCATAGGTTTCAC211500.2150414094515529No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT202730.20612456235514573No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT171110.173975109083949No Hit
CTTCAAATGGACACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAG170660.17351757417022232No Hit
GGACACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAGGCTTTGAA166960.16975562043513603No Hit
CCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGA151180.15371139612711948No Hit
CTCCAAAAAGGGTATGAAGTGATTTGTCACAATTTTCAGCTGACTCATCA135150.1374129857559214No Hit
CACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAGGCTTTGAAATT133580.13581669727914153No Hit
CTTTGAAATTTTCTTCTCCCAAATCTTTAAACCGATGAGCAACCTCACTC123990.126066119895499No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA115520.11745429607490966No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA111880.11375334699498695No Hit
CACAATTTTCAGCTGACTCATCAGCAACACATGTTTTTGCAAATTCAGTT108470.11028624909319121No Hit
CTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCT107860.10966603509902835No Hit
CTTCATTGTCATGAAAAGCAGTGCACATCACATCAACCTCTGGTCTCACC101980.10368757889299936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)