FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11143831
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT233840.2098380709470558No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG187970.16867628376632776No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT165150.14819858628509353No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC158590.14231192127734169No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT138720.12448142833465438No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA125570.11268117759502994No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC124610.11181971442316381No Hit
CTCATCCACAATGATTTCTCCAGTGCTCATCTTGTTCTCGAGTTTTCTCT111830.10035148594769608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)