FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004827895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2807285
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC47310.16852581764943708No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC41760.14875582635891976No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC35630.1269197819245285No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA34310.12221772994191898No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATACCGCTCACACCT31680.11284924758262876No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT31280.11142438334547436No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT30110.10725665545179774No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT29250.10419319734191576No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG28770.10248336025733049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)