FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13149786
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA352770.26827052546710645No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG221390.16836015430213086No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC218000.16578216558048928No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT200680.15261084857198437No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG198840.15121158625699307No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC179890.13680070534988176No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT164840.12535565217563235No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT149400.11361401622809679No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)