FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9795491
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT254940.260262604498335No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT223630.22829891834926908No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC186410.19030184398107253No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC185820.18969952603703072No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT174220.17785734273044607No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT143010.14599574436850588No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT138150.14103427791419543No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA137340.140207366838477No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATACCGCTCACACCT130100.13281621105057417No Hit
GGGCAGGAAAGCTCCATGCACATAGCCCAGCAAAGAGCAACACAGAGCTG128080.13075403775063446No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG127940.13061111484865842No Hit
CACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTT126470.1291104243779102No Hit
CCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTT123660.1262417575596772No Hit
CGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCTCT105920.10813138412357277No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC105240.1074371871711178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)