FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10002223
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT257500.25744277047212405No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT227320.2272694779950417No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC187600.1875583057886232No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC185670.185628734732269No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT173410.1733714595245477No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT144340.14430792034930634No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA142030.14199843374817778No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT140530.1404987671240683No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATACCGCTCACACCT132090.1320606429190791No Hit
GGGCAGGAAAGCTCCATGCACATAGCCCAGCAAAGAGCAACACAGAGCTG130730.1307009451798865No Hit
CACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTT127280.12725171194443474No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG127140.12711174305951786No Hit
CCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTT124890.12486224312335367No Hit
CGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCTCT108330.10830592359318524No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC105960.10593645032709229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)