FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13036326
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA347540.26659351722256713No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG236700.18156956185354678No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC232620.17843984570499385No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG187470.14380585450225777No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT171900.13186230537653015No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC167100.12818028637823264No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT153320.11760982350395349No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT140710.10793685276050935No Hit
CACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTA137700.10562792001366028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)