FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13382176
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACG499990.3736238411451172No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA221030.16516745856578183No Hit
CCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGA173130.12937357870648242No Hit
CTCCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGG162100.1211312719246855No Hit
CCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT160990.120301810408113No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT145780.10893594584318723No Hit
CTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCT139770.1044448974516551No Hit
CGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA137890.10304004371187467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)