FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12931719
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT379930.2937969808963526No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT344590.2664688275394787No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA328040.2536708383471679No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC312600.24173120371700002No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA264310.2043889138017923No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG236460.18285272050838716No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC186820.1444664858554381No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG186230.1440102433404252No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG185490.14343800696566328No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT185260.14326014971404807No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG178180.13778523953389335No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA172090.13307588882808233No Hit
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTA164240.12700554350121587No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC160690.12426035548715526No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA152320.11778789811315882No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT150530.1164037047201536No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC143600.11104478839974795No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT143070.11063494342863467No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA141390.10933581219944541No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA130190.10067493733818374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)