FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12893030
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT379100.29403483897889016No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT342530.2656706763266664No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA328460.25475780324718084No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC310790.24105272383605716No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA259660.2013956377980971No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG239990.18613933264717447No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG188240.14600136662987678No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC186230.14444238476137883No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT183570.1423792545274462No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG181920.1410994932921121No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG178410.13837709211876495No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA173580.13463088195715048No Hit
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTA162100.12572684621070454No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC156980.12175570831681924No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA155190.12036736127969919No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT148330.1150466569921888No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA142040.11016805204052112No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT141070.10941570755671863No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC139070.10786448181691968No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA130220.10100030791830934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)