FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12968378
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT382230.294740020687244No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT340510.26256945934179277No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA331920.25594565488451987No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC314140.24223538209635778No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA263610.20327137287330768No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG241730.18639956361543442No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG188660.14547694399407543No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC186800.144042685985865No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT186410.1437419544680144No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG184050.14192214323179045No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG183650.1416137006493796No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA171900.13255319979106098No Hit
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTA167320.12902153222245683No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC161270.12435633816349277No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA155380.11981452113749307No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT151710.11698456044387355No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA146570.11302107325989418No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC142910.11019882363083493No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT142340.10975929295089948No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA132610.10225642713375567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)