FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14187529
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT568990.4010494004981417No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT258800.18241372405300457No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC215670.1520137861920846No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG212700.14992039840059534No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT177770.12530018440843363No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA177120.12484203556517842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)