FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13068487
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT355600.2721049498691011No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT279230.213666662407056No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG187630.14357438623155075No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA164940.12621200908720343No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC157280.12035058075200289No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)