FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13089985
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT355000.2711996996176848No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT281160.2147901620972064No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG189510.14477480302689422No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA167980.1283271142021935No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC157980.12068768604394887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)