FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13805125
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT592590.4292536286342934No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC474740.34388678117728017No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT387780.28089568185728125No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA366260.26530726813411687No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC330500.2394038445867024No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG309260.2240182540904193No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG291480.2111389791834554No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT236760.17150152570150579No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC235300.17044394744705318No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA222810.16139658279081137No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT221980.16079535679684176No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG211960.1535371827491602No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA204740.14830724097029183No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC197120.14278755172445018No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA196870.14260645955759182No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT188330.13642035113771153No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT187850.13607265417734357No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT179610.13010385635769325No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT175820.12735849910812108No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA175540.12715567588123974No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC170070.12319337927037967No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT144680.10480165880424842No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC141710.10265028386197154No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA138680.10045544679964868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)