FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19848880
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC705740.35555658556049513No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA589930.2972107242322993No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC563140.28371374102720154No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA560980.28262551841716005No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG535550.26981371241097735No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA513800.2588559152959764No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA513420.2586644687256913No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT488820.24627082233355232No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG459000.2312473046338131No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC443760.2235692895518538No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG436070.2196950155374006No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT419160.2111756431597148No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG416900.21003703987328254No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG390980.19697836855278486No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC386030.1944845250714398No Hit
AAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAG359710.18122433104537888No Hit
GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAA354580.1786398023465304No Hit
GTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACT345190.1739090568334334No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC342790.172699920600054No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT324390.16342987614414514No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT317670.1600442946906828No Hit
GATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAA313090.15773685971198376No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACA291260.14673875805587014No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT289690.14594778143653445No Hit
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA266710.13437030200192657No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG253940.12793668962682025No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT252810.1273673879836041No Hit
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGAT252170.12704495165470295No Hit
GGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGG251270.12659152556718567No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC234040.11791093502504926No Hit
AGGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACAC233400.1175884986961481No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA232190.11697889251181931No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC221070.11137656129716134No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC220950.1113161044854924No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT217380.1095175143383405No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT215920.10878195646303469No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT210270.10593544824695397No Hit
AGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCC206210.10388999278548713No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT204030.1027916940401675No Hit
GACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCA201170.10135080669539037No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)