FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18027912
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA734750.4075624509371912No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG432760.24004998471259456No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG422710.23447529586343666No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC401340.22262145499711783No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT337200.18704329153592494No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG271900.1508216814015955No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG234520.13008716705517534No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC232440.1289334006067924No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA230710.12797377755116623No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT228090.12652047558253002No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT227920.12642617736319103No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT220370.12223822703372414No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC216050.11984194287169805No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA203950.11313012843639353No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT203380.11281395205390396No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT202230.1121760523348461No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT202170.1121427706103735No Hit
CCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTAC202010.11205401934511329No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA201300.11166018560552105No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT199410.11061181128463463No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA197630.10962445345861462No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC195350.10835974792865642No Hit
CACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTA192360.10670120865910594No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC182250.10109323808547546No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT180840.10031111756036973No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)