Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004828048 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18087447 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA | 66313 | 0.36662443295618224 | No Hit |
CTCTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCA | 33109 | 0.18304960340726914 | No Hit |
CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATC | 25344 | 0.14011927719815848 | No Hit |
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG | 22478 | 0.12427403380919375 | No Hit |
CCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC | 18610 | 0.10288903679994198 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCGA | 10685 | 0.0 | 32.973576 | 4 |
CCCGTAT | 11460 | 0.0 | 31.576931 | 1 |
CGTATCG | 12455 | 0.0 | 31.49223 | 3 |
TATCGAA | 11310 | 0.0 | 31.40721 | 5 |
CCGTATC | 13425 | 0.0 | 29.387524 | 2 |
ACCCGGG | 50385 | 0.0 | 26.477152 | 145 |
ATCGAAG | 15610 | 0.0 | 24.658932 | 6 |
CGTTTAA | 4045 | 0.0 | 23.656544 | 5 |
GAACTCT | 66530 | 0.0 | 22.66358 | 9 |
TCGGTAT | 1835 | 0.0 | 21.73727 | 2 |
GTCGGTA | 2245 | 0.0 | 21.729845 | 1 |
GTCCCGT | 3435 | 0.0 | 21.62079 | 1 |
TCGAAGG | 19745 | 0.0 | 20.302553 | 7 |
CTTGAAC | 67905 | 0.0 | 20.251081 | 6 |
ACGACTT | 3590 | 0.0 | 19.876036 | 1 |
GTTACGA | 1555 | 0.0 | 19.666046 | 1 |
TTGAACT | 72745 | 0.0 | 19.59129 | 7 |
TCTTGAA | 69055 | 0.0 | 19.473528 | 5 |
CCTCTTG | 66385 | 0.0 | 19.429245 | 3 |
CTCTTGA | 69670 | 0.0 | 18.896194 | 4 |