EGAF00004828078 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828078
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23087610
Sequences flagged as poor quality	0
Sequence length	151
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	101176	0.43822639069180397	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTAT	47774	0.20692483977336765	TruSeq Adapter, Index 15 (97% over 40bp)
CTCTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCA	46951	0.20336015724451342	No Hit
CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATC	43280	0.18745985400827544	No Hit
CTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTT	34112	0.14775024352888844	No Hit
CCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC	33552	0.14532470013136917	No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG	28180	0.1220568088251664	No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC	26734	0.11579370926657198	No Hit
CTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTC	24548	0.10632542736125566	No Hit
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC	24429	0.10580999938928282	No Hit
CCCGCTTTGGGCTGCATTCCCAAGCAACCCGACTCCGGGAAGACCCGGGC	23694	0.10262647368003877	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCGA	13710	32.778923	4
GTCGGTA	2615	30.712646	1
CCCGTAT	15145	30.082335	1
CGTATCG	18115	29.610138	3
ACGACTT	4975	29.058176	1
TATCGAA	15875	28.354137	5
GTTACGA	2305	27.557798	1
CCGTATC	19320	27.54133	2
TCGGTAT	2490	26.202284	2
GAACTCT	86180	25.567749	9
ACCCGGG	83975	25.233122	145
TACGACT	2460	24.45626	3
TTGAACT	92970	24.184576	7
CTTGAAC	90370	24.086273	6
TTACGAC	2465	23.821224	2
CCTCTTG	85435	23.340052	3
TCTTGAA	91775	23.022514	5
CTCTTGA	89310	22.968193	4
AACGGTT	35050	20.907482	6
CCCTCTT	86635	20.718258	2