FastQCFastQC Report
Fri 1 Jul 2022
EGAF00004828123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20566569
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA1174690.5711647868927482No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT683820.3324910440822677No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC673810.3276239221038764No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC573790.2789916003977134No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC556520.2705944778635659No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA551490.26814876122507353No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA524090.2548261695959107No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG466350.2267514819802953No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG444050.21590864280765548No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT421790.20508525267389036No Hit
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGAT374660.18216942261978653No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG365280.17760862300367164No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT355590.17289709333627792No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG337500.16410126550519924No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG330310.16060530076747365No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT311840.15162470706708542No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA297310.14455984369585417No Hit
GTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACT277420.13488880911541445No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT261560.12717726520159975No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT260320.12657434499648434No Hit
GATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAA248760.12095357276169884No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC247270.12022909606361665No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA227220.11048026532767814No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT225800.10978982444762664No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA223700.10876874990670539No Hit
CCCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTAC217980.10598753734762467No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA212280.10321604930798131No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC206070.10019658602268566No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)