FastQCFastQC Report
Wed 11 May 2022
EGAF00004828125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20805387
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA1188540.5712655092644996No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC682690.32813136328586434No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT681450.32753536379784715No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC589400.28329201470753707No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA575460.2765918269148274No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC574520.2761400208513305No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA532160.255779909309065No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG481710.23153138175223562No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG443910.2133630102626786No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT436360.20973414241225122No Hit
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGAT387940.1864613236946758No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG379170.1822460692511992No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT359530.172806206392604No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG346160.1663799861064829No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG343480.1650918581807683No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT316530.1521384822113619No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA313590.15072538665106303No Hit
GTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACT288610.13871888083600656No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT267530.12858688953971392No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT267510.1285772766447459No Hit
GATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAA259810.12487631208205835No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC256240.12316041033026685No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT234160.11254777428557326No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA231800.11141345267934695No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA220860.10615519913184024No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA220060.10577068333311945No Hit
CCCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTAC219600.105549586748855No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC209800.10083926821452541No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)