EGAF00004828158 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828158
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21369698
Sequences flagged as poor quality	0
Sequence length	151
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTATG	548615	2.567256682803847	TruSeq Adapter, Index 13 (97% over 39bp)
CTCTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCA	141643	0.6628217207374667	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	91817	0.4296597921037536	No Hit
CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATC	83991	0.3930378426499055	No Hit
CTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTT	74107	0.34678543421624397	No Hit
CTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTC	59232	0.27717752492337516	No Hit
CTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAAC	55842	0.26131394088957177	No Hit
CCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC	47569	0.22260024451445218	No Hit
CTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCCCAAGCAACCCGA	38565	0.18046581659694022	No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT	38465	0.17999786426555958	No Hit
CCCGCTTTGGGCTGCATTCCCAAGCAACCCGACTCCGGGAAGACCCGGGC	34653	0.16215952139332995	No Hit
CCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACT	28272	0.13229948312793188	No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG	25225	0.11804097559076408	No Hit
AACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTT	24460	0.11446114025570224	No Hit
CTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGG	23935	0.11200439051595394	No Hit
CTCGTGCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTG	22143	0.10361868473761303	No Hit
CCCATTTAAAGTTTGAGAATAGGTTGAGATCGTTTCGGCCCCAAGACCTC	21782	0.10192937682132898	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCTTAAC	57395	37.784695	2
CTTAACG	58645	36.917446	3
TTAACGG	58885	36.77372	4
TAACGGT	60150	35.96907	5
AACGGTT	60735	35.534977	6
CTCTTAA	62425	35.529335	1
GTTACGA	2550	32.989082	4
TTACGAC	2605	32.56448	5
TGTTACG	2635	32.502052	3
GTATCGA	12070	31.903599	4
TTCGCGC	5435	31.61295	7
CCCGTAT	12395	31.493778	1
ACGGTTT	72350	29.930426	7
CGGTTTC	75105	28.918987	8
TATCGAA	13335	28.762636	5
GTCGGTA	1755	27.074863	1
TGTCGAG	3750	25.134954	5
GGTTTCA	86750	25.08715	9
GTCCTCT	17420	24.801008	1
CGTATCG	16745	24.57578	3