FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11189389
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC133970.1197295044438977No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG122070.10909442865915198No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT114900.10268657207288083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)