FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8626342
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC154320.17889390427599555No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA153950.1784649855060233No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA116960.13558470090798627No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA116600.13516737453720243No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG111630.1294059521405481No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG98490.11417353960693885No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT95350.11053352626176889No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG95150.11030167827800011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)