FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8600797
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC147140.17107716877866086No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA135480.15752028562004194No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA113260.13168547054418328No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA112420.1307088168689483No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG109590.12741842412976379No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT94120.10943171894418621No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG93480.1086876018582929No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG88650.10307184322569177No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)