FastQCFastQC Report
Wed 11 May 2022
EGAF00004828190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8519092
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC157590.18498450304328207No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA150420.17656811312754928No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA120810.14181088782701254No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA120290.1412004941371686No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG116250.13645820470068876No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT101660.11933196636449049No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG99740.11707820504814363No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG94530.11096252980951492No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA87380.10256961657416072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)