FastQCFastQC Report
Wed 8 May 2024
EGAF00004828192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10269794
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC315280.3069973944949626No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG269170.26209873343126455No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG251640.24502925764625852No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC220540.21474627436538649No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT214750.20910838133656817No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA206700.20126985994071547No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT180700.17595289642616005No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA163790.1594871328480396No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA149420.14549464185941802No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT134060.13053815879851144No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACA133490.12998313305992312No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT124980.12169669615573595No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG123060.11982713577312262No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT117740.1146468955462982No Hit
AGGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACAC117370.11428661568089876No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT115950.11290391998125765No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC109350.10647730616602437No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC103050.10034281116057439No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)