FastQCFastQC Report
Wed 8 May 2024
EGAF00004828198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6726871
Total Bases672.6 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC228250.33931080289781085No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG196860.29264720551352924No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG172330.2561815144069211No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT160160.238089893503235No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC149070.22160377387941582No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA141870.21090043201363604No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT131690.19576709587563074No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA116460.1731265546789882No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA111250.1653814975788892No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT97080.14431672615693092No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT90450.13446073218885868No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACA89200.1326025131149386No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG86340.1283509078738094No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT85010.1263737627791584No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC82560.12273165339427498No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT79890.11876249745238164No Hit
AGGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACAC76540.11378247033427577No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC73590.10939707331982433No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG73460.10920381853613664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)