FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10188137
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC321590.3156514287155738No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG281350.2761545118602155No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG257030.25228361181244424No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC229150.2249184517247854No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT223350.21922555615418204No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA212660.20873296069732866No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT185110.1816917067369628No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA170230.16708648499720805No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA145510.14282297146180895No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT138160.13560869862664782No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACA133080.13062250733377456No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT128280.12591114548224078No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG124290.12199482594315329No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT118550.11636082239569413No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT118170.1159878395824477No Hit
AGGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACAC116780.11462350771294105No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC111710.10964713175725847No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG106360.10439592636023642No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC104990.10305122516511116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)