FastQCFastQC Report
Wed 8 May 2024
EGAF00004828244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12145828
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG145470.11976952085934363No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC140460.11564464769301855No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT135440.11151154124692034No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC130910.10778186550970423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)