FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8024365
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG117580.14652872844144055No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT114960.14326367257720704No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC108250.13490164019208997No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC102210.12737456484095624No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA90920.11330491571607222No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG90560.11285628208587221No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC86460.10774684351970529No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT82370.10264986699882171No Hit
CGATAAGGAGACCTGCTTTGCCGAGGAGGGTAAAAAACTTGTTGCTGCAA81730.10185229610068834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)