FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12371960
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG177330.14333218018810276No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT169730.13718925699727447No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC169440.13695485598078236No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC158180.1278536303059499No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG136020.10994215952848214No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA135070.1091742941296286No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC129540.10470450922893382No Hit
CGATAAGGAGACCTGCTTTGCCGAGGAGGGTAAAAAACTTGTTGCTGCAA128100.1035405869401453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)