FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14996021
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT453890.3026736225562768No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN243960.1626831544180953No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC221140.14746578442374814No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA207720.13851674387492524No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG206960.13800994277081902No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA170910.11397023250367547No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC170730.11385020066322926No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG166300.11089608370113645No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG161470.10767522931582985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)